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Report for Sequence Feature Glyma10g34080

Feature Type:gene_model
Chromosome:Gm10
Start:42262334
stop:42279064
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g34080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04360AT Annotation by Michelle Graham. TAIR10: limit dextrinase | chr5:1221566-1228399 FORWARD LENGTH=965 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0005983GO-bp Annotation by Michelle Graham. GO Biological Process: starch catabolic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019760GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004556GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-amylase activity SoyBaseN/AISS
GO:0010303GO-mf Annotation by Michelle Graham. GO Molecular Function: limit dextrinase activity SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
GO:0051060GO-mf Annotation by Michelle Graham. GO Molecular Function: pullulanase activity SoyBaseN/AISS
KOG0470 KOG 1,4-alpha-glucan branching enzyme/starch branching enzyme II JGI ISS
PTHR10357Panther AMYLASE JGI ISS
PTHR10357:SF22Panther ALPHA-GLUCOSIDASE JGI ISS
PF00128PFAM Alpha amylase, catalytic domain JGI ISS
PF02922PFAM Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JGI ISS
PF11852PFAM Domain of unknown function (DUF3372) JGI ISS
UniRef100_B9T3G1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pullulanase, putative n=1 Tax=Ricinus communis RepID=B9T3G1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1LCL8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCL8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g34080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g34080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g197000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g34080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g34080
>Glyma10g34080.1   sequence type=CDS   gene model=Glyma10g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCTGTTAGCATCATCCTCTTCTCTTTCTCCTTCTCTCCCTTCTTCATTCCCTCGCCCTTCTCTCCATCTCCACCTTCACTTTCCTTCCCAAACTACCCAGCTTCGCCTCCATACCCCACCACCCCTTTCTTGCTCCCTTAATTCTTCTTCTTCTTCTTCTTACGTGGAACAATCTGCTTCATCTTCTCAGATGCAGAATGGCTTGCTGTACTCCAGAGCTTATTGGGTTGCTGAATCTCTCATAGCTTGGGACGTGGATGTTGGAAACGGGTTTTCTTGCTACCTGCTTGCCAGCAAAAATGCTTCTTTGACCATTGCAAATTGCCAAATTCAAGGCGAGGATTTGAAAATTAAGCTTCAGGAGGATAGGGTTGGCCTTCCTGCAAATGTGGTGGAGAAATTTCCCCATATTCGAGGTCACAAAGTTTTCAGCCTGCCACCTACTTTGGATGTTAAGCCTCTTCTTAAATTCCGGTTAGCAGTTGTTATTTGTGATTCTGATGGGGAATGCATGAACTGTACTGGTTTGCAATTACCTGGTGTTTTAGATGACCTTTTCTCATATAGTGGTCCCCTTGGTGCACTTTTCTCAGAGGAAGCTGTGTCACTTTACCTGTGGGCACCTACTGCTCAAGCAGTGCATGCTTACATCTATAAGGACCCATCAGGAGATGATCCCATAGAAATTGTTTGCCTTGAGGAGGAAAATGGTGTTTGGAGAACTAAAGGACCAAAAAGTTGGGAAGGTTGTTACTATGTTTATGAAGTATGTGTTTACCACCCTAGCACTATGCGGATTGAAAAATGCTATACAAGTGATCCATATGCAAGAGGACTTTCATCAGATGGCAGGCGGAGTTTTCTGCTTAATCTTGACTCTGTTAAGTTAAAACCTGATGGATGGGATAATCTGGCAAATAAAAAACCTACTATACATTCTTTCTCTGATATAAGCATATATGAAATGCATATAAGGGATTTCAGTGCCAGTGACCTCTCTGTGCAACCTGAATTTCGTGGTGGTTATCTGGCCTTTACATTGCAGGATTCTGCGGGTGTACTTCATCTGAAGAAATTATCAAGTGCTGGTATCACTCATGTCCATCTATTGCCAACATTTCAGTTTGCTGGGGTTGATGATCAAAAGGAGGACTGGAGATTTGTAGATACCTCAATACTGGAAAGTTTGCCACCTGATTCAGATCAGCAACAAGCTCTCATCACAGCCATCCAAAACTTTGATGGTTACAACTGGGGGTACAACCCTGTTCTTTGGGGCGTTCCTAAAGGCAGCTATGCAAGTAATCCAAACGGTCCATACCGTACAATTGAGTTCCGAAAGATGGTTATGGCTCTTAACCATATCGGCCTCCGTGTTGTCTTGGATGTTGTCTACAATCATTTGCAAGGAAGTGGGCCTTTTGATGAACATTCTGTCCTTGATAAGATTGTTCCAGGTTACTATTTAAGAAGGAATAGTGATGGTTTAATCGAGCACAGTACTTGTATAAATAATACTGCTAGTGAGCACTTTATGGTTGAGCGTTTGATCCTTGATGATCTTGTACACTGGGCTGTCAATTACAAGATTGATGGGTTCAGATTTGATCTTATGGGCCATATAATGAAGAGCACAATGGTGAAAGCAAAAACTGCTCTCCAATGTTTAACAAAAGAAAAGGATGGACTTGATGGTTCAAGCATCTACATATATGGTGAAGGATGGGACTTTGGTGAAGTTGCCAAAAATGGCCGTGGGGTAAATGCTTCTCAGTTCAATCTCCCAGGAACACAAATTGGGAGCTTTAATGACCGAATTCGAGATGCCATACTTGGTGGATCTCCGTTTGGCCACCCTCTACAACAGGGTTTTGTGACTGGGCTACTCTTGCAGCCTAATGGCCATGACCATGGAACAGAAGCTAATGCGAAATCCATGCTTGCTGCATCAATGGATCACATCCAGATTGGAATGGCTGCAAACTTGAAGGATTTTGTGCTAACCAATTCTGAAGGGGAAGAGGTAAAAGGGTCAGAAATATTAACATATGGTGGGACACCTGTTGCATATGCCTCATGCCCCATAGAGACAATCAATTATGTTTCTGCTCATGACAATGAAACCCTATTTGACATTGTGAGCTTAAAGACTCCAATGGATATCAGTGTATCTGAGAGATGCAGGATAAACCATTTGGCAACCAGTATTATAGCATTATCACAGGGTATACCATTTTTTCATTCTGGAGATGAGATACTCCGCTCAAAATCACTGGATCGAGATTCTTACAATTCTGGTGATTGGTTCAACAGACTTGACTTCACATACAATAGTAATAATTGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTAATCAAACCAAGACTGGCAAACCCATCCTTCAGGCCTCAGAAGACTGACATCCTTGCTACGGTGGACAATTTCTTGAACCTGCTGCGTATAAGATACTCTTCACCACTTTTCCGCTTGAAGACAGCTAACACTATCCAGGAACGAGTACGCTTTCACAACACTGGACCATCATGGGTTTGTGGAGTCATAGTGATGAGCATTGAAGATGGTCACAATGGCTTTCCTGGGTTGTCTCAGTTGGATCCCATATATTCGTTCATTGTGGTTGTTTTCAATGCGAGTCCAAAAGAAGTATCATTTGTTAGCCCTGCCCTGCAATTGAGAAATCTCCAGTTGCATCCCATACAGGTATCATCATCTGACGACCTTGTTAAGAGCTCAAGATATGAGGCATCTTCTGGCTGTTTTGTTGTGCCTCGAAGGACAACAGCTGTGTTTGTGGAGCCAAGGAAAACGTGA
Predicted protein sequences of Glyma10g34080
>Glyma10g34080.1   sequence type=predicted peptide   gene model=Glyma10g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLLASSSSLSPSLPSSFPRPSLHLHLHFPSQTTQLRLHTPPPLSCSLNSSSSSSYVEQSASSSQMQNGLLYSRAYWVAESLIAWDVDVGNGFSCYLLASKNASLTIANCQIQGEDLKIKLQEDRVGLPANVVEKFPHIRGHKVFSLPPTLDVKPLLKFRLAVVICDSDGECMNCTGLQLPGVLDDLFSYSGPLGALFSEEAVSLYLWAPTAQAVHAYIYKDPSGDDPIEIVCLEEENGVWRTKGPKSWEGCYYVYEVCVYHPSTMRIEKCYTSDPYARGLSSDGRRSFLLNLDSVKLKPDGWDNLANKKPTIHSFSDISIYEMHIRDFSASDLSVQPEFRGGYLAFTLQDSAGVLHLKKLSSAGITHVHLLPTFQFAGVDDQKEDWRFVDTSILESLPPDSDQQQALITAIQNFDGYNWGYNPVLWGVPKGSYASNPNGPYRTIEFRKMVMALNHIGLRVVLDVVYNHLQGSGPFDEHSVLDKIVPGYYLRRNSDGLIEHSTCINNTASEHFMVERLILDDLVHWAVNYKIDGFRFDLMGHIMKSTMVKAKTALQCLTKEKDGLDGSSIYIYGEGWDFGEVAKNGRGVNASQFNLPGTQIGSFNDRIRDAILGGSPFGHPLQQGFVTGLLLQPNGHDHGTEANAKSMLAASMDHIQIGMAANLKDFVLTNSEGEEVKGSEILTYGGTPVAYASCPIETINYVSAHDNETLFDIVSLKTPMDISVSERCRINHLATSIIALSQGIPFFHSGDEILRSKSLDRDSYNSGDWFNRLDFTYNSNNWGVGLPPQEKNEKNWPLIKPRLANPSFRPQKTDILATVDNFLNLLRIRYSSPLFRLKTANTIQERVRFHNTGPSWVCGVIVMSIEDGHNGFPGLSQLDPIYSFIVVVFNASPKEVSFVSPALQLRNLQLHPIQVSSSDDLVKSSRYEASSGCFVVPRRTTAVFVEPRKT*






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